Remove Explicit Hydrogens ( removeexplicith:isotopic:mapped:wedged)įused bicyclic compounds: Explicit Hydrogens are removed by default.īridged bicyclic compounds: Remove Explicit Hydrogens ( removeexplicith:bridgehead ) Remove Explicit Hydrogens ( removeexplicith) Metal Connected : hydrogen connected to a metal atom ( removeexplicith:metalconnected) īridgehead : hydrogen connected to a bridgehead atom (an atom that is shared by both rings in a bridged bicyclic (multicyclic) compound) ( removeexplicith:bridgehead) Protocols Citations (citation manager built-in) Brainstorming. Valence Error : hydrogen connected to an atom which has valence error ( removeexplicith:valenceerror) Ability to record other relevant material. S-group : hydrogen which is the only atom in a S-group ( removeexplicith:sgroup) S-group End : hydrogen connected to a Superatom S-group ( removeexplicith:sgroupend) Find more Chemistry widgets in WolframAlpha.
#Chemdoodle widgets how to
Polymer End Group : hydrogen connected to a SRU (Structural Repeating Unit) S-group ( removeexplicith:polymerendgroup) ChemDoodle What is the electron-pair geometry for N in NOBr A step-by-step explanation of how to draw the. H Connected : hydrogen connected to a hydrogen atom ( removeexplicith:hconnected) Wedged : hydrogen connecting with wedged bond ( removeexplicith:wedged) Radical : hydrogen radicals ( removeexplicith:radical) Isotopic : hydrogen isotopes ( removeexplicith:isotopic) Mapped : mapped hydrogens ( removeexplicith:mapped) Lonely : hydrogen atom without connection ( removeexplicith:lonely) Ĭharged : charged hydrogen atoms ( removeexplicith:charged)
The following options can be set to remove specific hydrogen types: By default, "bound", "non-isotope", "neutral", "non-radical", "metal-connected", and "non-mapped" hydrogen atoms are removed. (Explicit hydrogens are represented by connecting bonds to heteroatoms or carbons, while implicit hydrogens do not appear directly in the structure or are simply written together with the other atom.) To fine tune the explicit hydrogen removal, specify which hydrogen atoms should be removed. In addition to the predefined Jmol, Rasmol, PyMOL and CDK color sets, you can also manually define your own elemntal color set to apply to molecule rendering.
#Chemdoodle widgets full
You have full control over font, size and color. This action transforms explicit hydrogen atoms to implicit ones. ChemDoodle 3D’s advanced 3D graphics engine can render text beautifully.
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